java.lang.Object
- java.lang.Thread
- - gov.nih.mipav.model.algorithms.AlgorithmBase
  - - gov.nih.mipav.model.algorithms.utilities.AlgorithmExtractSlices

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener
```
public class AlgorithmExtractSlices
extends AlgorithmBase
```
Algorithm that extracts the slices indicated in the list from the srcImage and puts them into the destImage.
Note that an image is a set of slices; each slice is XxY, with Z slices.

Version:

v0.11 1 Nov 1999 (processes most images)

Author:

Lynne Pusanik based on AlgorithmRemoveSlices, David Parsons (parsonsd@cbel.cit.nih.gov) (with vast help from M.McAuliffe)

See Also:

AlgorithmRemoveSlices

Nested Class Summary
- Nested classes/interfaces inherited from class java.lang.Thread
  java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type	Field	Description
`private boolean`	`convert4Dto3D`	If true convert the selected images to 3D datasets.
`private java.util.Vector<java.lang.String>`	`extractList`	List of slices to extract from source image.
`private int`	`oldZdim`	Original Z dimension of the image.
`private int`	`sliceArea`	Area of a slice (Xdim * Ydim).
`private int`	`Xdim`	X dimension of the image.
`private int`	`Ydim`	Y dimension of the image.

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor	Description
`AlgorithmExtractSlices(ModelImage srcImage, ModelImage destImage, java.lang.String[] extractSlices)`	Import source and destination images into the class.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`private void`	`calcStoreInDest()`	DOCUMENT ME!
`java.util.Vector<java.lang.String>`	`getExtractList()`	Method to return the extract list since local copies may change while the algorithm runs.
`void`	`runAlgorithm()`	Calculates the final output.
`void`	`setConvert4Dto3D(boolean doConvert)`	DOCUMENT ME!

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, finalize, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread
activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - convert4Dto3D
```
private boolean convert4Dto3D
```
    If true convert the selected images to 3D datasets.
  - extractList
```
private java.util.Vector<java.lang.String> extractList
```
    List of slices to extract from source image.
  - oldZdim
```
private int oldZdim
```
    Original Z dimension of the image.
  - sliceArea
```
private int sliceArea
```
    Area of a slice (Xdim * Ydim).
  - Xdim
```
private int Xdim
```
    X dimension of the image.
  - Ydim
```
private int Ydim
```
    Y dimension of the image.
- Constructor Detail
  - AlgorithmExtractSlices
```
public AlgorithmExtractSlices(ModelImage srcImage,
                              ModelImage destImage,
                              java.lang.String[] extractSlices)
```
    Import source and destination images into the class.
    
    Parameters:
    
    srcImage - source image (image to clip from)
    
    destImage - destination image (image to paste to)
    
    extractSlices - list of slice numbers indicating which slices in source should be extracted to destination.
- Method Detail
  - getExtractList
```
public java.util.Vector<java.lang.String> getExtractList()
```
    Method to return the extract list since local copies may change while the algorithm runs.
    
    Returns:
    
    DOCUMENT ME!
  - runAlgorithm
```
public void runAlgorithm()
```
    Calculates the final output.
    
    Specified by:
    
    runAlgorithm in class AlgorithmBase
  - setConvert4Dto3D
```
public void setConvert4Dto3D(boolean doConvert)
```
    DOCUMENT ME!
    
    Parameters:
    
    doConvert - DOCUMENT ME!
  - calcStoreInDest
```
private void calcStoreInDest()
```
    DOCUMENT ME!

Class AlgorithmExtractSlices

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Detail

convert4Dto3D

extractList

oldZdim

sliceArea

Xdim

Ydim

Constructor Detail

AlgorithmExtractSlices

Method Detail

getExtractList

runAlgorithm

setConvert4Dto3D

calcStoreInDest