java.lang.Object
- java.lang.Thread
- - gov.nih.mipav.model.algorithms.AlgorithmBase
  - - gov.nih.mipav.model.algorithms.utilities.AlgorithmComplexConcat

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener
```
public class AlgorithmComplexConcat
extends AlgorithmBase
```
Simple algorithm that generates a complex image from real data and imaginary data.

Author:

Justin Senseney

Nested Class Summary
- Nested classes/interfaces inherited from class java.lang.Thread
  java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type	Field	Description
`boolean`	`commonMapping`	If true, map all colors based on image min and max.
`private int`	`dataType`	ARGB, ARGB_USHORT, or ARGB_FLOAT
`private ModelImage`	`destImage`	Destination image where results are to be stored.
`private boolean`	`performBoundsChecking`	flag for performing bounds checking...normally should be set to true unless negative numbers are desired
`private boolean`	`reMap`	Flag indicating whether of not to remap the data.
`private float`	`remapHighestValue`
`private ModelImage`	`srcImageB`	Source gray scale image to be stored in the BLUE channel.
`private ModelImage`	`srcImageG`	Source gray scale image to be stored in the GREEN channel.
`private ModelImage`	`srcImageR`	Source gray scale image to be stored in the RED channel.

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
destFlag, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor	Description
`AlgorithmComplexConcat(ModelImage srcImgR, ModelImage srcImgG, ModelImage srcImgB, int dataType, boolean remap, boolean commonMapping, float remapHighestValue, boolean performBoundsChecking)`	Creates a new AlgorithmRGBConcat object.
`AlgorithmComplexConcat(ModelImage srcImgR, ModelImage srcImgG, ModelImage srcImgB, ModelImage destImg, boolean remap, boolean commonMapping, float remapHighestValue, boolean performBoundsChecking)`	Creates a new AlgorithmRGBConcat object.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`private void`	`calcStoreInDest()`	Concatenate the image and store the results in the destination image.
`private void`	`calcStoreInPlace()`	Concatenate the image Must run getImageR after running this routine.
`void`	`finalize()`	Prepares this class for destruction.
`ModelImage`	`getImageR()`	Accessor to get imageR.
`void`	`runAlgorithm()`	Starts the program.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread
activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - destImage
```
private ModelImage destImage
```
    Destination image where results are to be stored. Must be of type RGB.
  - reMap
```
private boolean reMap
```
    Flag indicating whether of not to remap the data. If true and srcImage data max is remapHighestValue data will automatically be remapped [0-remapHighestValue].
  - commonMapping
```
public boolean commonMapping
```
    If true, map all colors based on image min and max. If false, map each color separately based on its own min and max.
  - remapHighestValue
```
private float remapHighestValue
```
  - srcImageB
```
private ModelImage srcImageB
```
    Source gray scale image to be stored in the BLUE channel.
  - srcImageG
```
private ModelImage srcImageG
```
    Source gray scale image to be stored in the GREEN channel.
  - srcImageR
```
private ModelImage srcImageR
```
    Source gray scale image to be stored in the RED channel.
  - performBoundsChecking
```
private boolean performBoundsChecking
```
    flag for performing bounds checking...normally should be set to true unless negative numbers are desired
  - dataType
```
private int dataType
```
    ARGB, ARGB_USHORT, or ARGB_FLOAT
- Constructor Detail
  - AlgorithmComplexConcat
```
public AlgorithmComplexConcat(ModelImage srcImgR,
                              ModelImage srcImgG,
                              ModelImage srcImgB,
                              int dataType,
                              boolean remap,
                              boolean commonMapping,
                              float remapHighestValue,
                              boolean performBoundsChecking)
```
    Creates a new AlgorithmRGBConcat object.
    
    Parameters:
    
    srcImgR - image model where result image of the Red channel is to be stored
    
    srcImgG - image model where result image of the Green channel is to be stored
    
    srcImgB - image model where result image of the Blue channel is to be stored
    
    dataType - Tells if srcImage will become ARGB, ARGB_USHORT, or ARGB_FLOAT
    
    remap - if true and srcImage data max is remapHighestValue data will automatically be remapped [0-remapHighestValue].
    
    commonMapping -
    
    remapHighestValue - The highest value that will occur if remapping occurs
    
    performBoundsChecking - flag for performing bounds checking...normally should be set to true unless negative numbers are desired
  - AlgorithmComplexConcat
```
public AlgorithmComplexConcat(ModelImage srcImgR,
                              ModelImage srcImgG,
                              ModelImage srcImgB,
                              ModelImage destImg,
                              boolean remap,
                              boolean commonMapping,
                              float remapHighestValue,
                              boolean performBoundsChecking)
```
    Creates a new AlgorithmRGBConcat object.
    
    Parameters:
    
    srcImgR - image model where result image of the Red channel is to be stored
    
    srcImgG - image model where result image of the Green channel is to be stored
    
    srcImgB - image model where result image of the Blue channel is to be stored
    
    destImg - destination image image model
    
    remap - if true and srcImage data max is remapHighestValue data will automatically be remapped [0-remapHighestValue].
    
    commonMapping -
    
    remapHighestValue - The highest value that will occur if remapping occurs * @param performBoundsChecking flag for performing bounds checking...normally should be set to true unless negative numbers are desired
- Method Detail
  - finalize
```
public void finalize()
```
    Prepares this class for destruction.
    
    Overrides:
    
    finalize in class AlgorithmBase
  - getImageR
```
public ModelImage getImageR()
```
    Accessor to get imageR.
    
    Returns:
    
    DOCUMENT ME!
  - runAlgorithm
```
public void runAlgorithm()
```
    Starts the program.
    
    Specified by:
    
    runAlgorithm in class AlgorithmBase
  - calcStoreInDest
```
private void calcStoreInDest()
```
    Concatenate the image and store the results in the destination image.
  - calcStoreInPlace
```
private void calcStoreInPlace()
```
    Concatenate the image Must run getImageR after running this routine.

Class AlgorithmComplexConcat

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Detail

destImage

reMap

commonMapping

remapHighestValue

srcImageB

srcImageG

srcImageR

performBoundsChecking

dataType

Constructor Detail

AlgorithmComplexConcat

AlgorithmComplexConcat

Method Detail

finalize

getImageR

runAlgorithm

calcStoreInDest

calcStoreInPlace