java.lang.Object
- gov.nih.mipav.model.algorithms.registration.vabra.VabraSolver

public class VabraSolver
extends java.lang.Object

Field Summary

Fields
Modifier and Type	Field	Description
`private int`	`currentLevelIdx`
`private int`	`currentResolutionIdx`
`private java.util.ArrayList<java.lang.Integer>`	`downSampleFactor`
`(package private) double[][]`	`gradients`
`(package private) float[]`	`gradMag`
`(package private) int[][]`	`grid`
`(package private) int`	`gridPoints`
`private java.util.ArrayList<java.lang.Integer>`	`gridSpacingX`
`private java.util.ArrayList<java.lang.Integer>`	`gridSpacingY`
`private java.util.ArrayList<java.lang.Integer>`	`gridSpacingZ`
`(package private) byte[][][]`	`gridVisited`
`(package private) VabraSubjectTargetPairs`	`imgSubTarPairs`
`(package private) int[]`	`index`
`(package private) float`	`interval_x`
`(package private) float`	`interval_y`
`(package private) float`	`interval_z`
`(package private) java.io.File`	`outputDir`
`private java.util.ArrayList<java.lang.Integer>`	`resolutionSwitchPoints`
`(package private) int[][]`	`reverseIdxGrid`
`(package private) boolean`	`saveIntermResults`
`(package private) int`	`xPts`
`(package private) int`	`yPts`
`(package private) int`	`zPts`

Constructor Summary

Constructors
Constructor	Description
`VabraSolver(VabraSubjectTargetPairs imgSubTarPairs, java.io.File configFile, java.io.File outputDir, boolean saveIntermResults)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`(package private) boolean`	`beenVisited(int gridIdx)`
`void`	`dispose()`
`(package private) void`	`generateFinePoints(int[] point, int[][] newPoints)`
`(package private) void`	`generateGrid(int[] box)`
`(package private) void`	`generateGrid(int[] boundingBox, int xPoints, int yPoints, int zPoints)`
`ModelImage`	`getDeformationField()`
`ModelImage`	`getDeformedSubject()`
`(package private) void`	`identifyRegions()`
`(package private) void`	`markVisited(int gridIdx)`
`(package private) void`	`optimizeAtGridPoints()`
`(package private) void`	`readConfigFile(java.io.File f)`
`(package private) void`	`registerAtCurrentLevel(int[] boundingBox)`
`void`	`registerImages()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

downSampleFactor

private java.util.ArrayList<java.lang.Integer> downSampleFactor

resolutionSwitchPoints

private java.util.ArrayList<java.lang.Integer> resolutionSwitchPoints

currentLevelIdx
```
private int currentLevelIdx
```

currentResolutionIdx
```
private int currentResolutionIdx
```

gridSpacingX

private java.util.ArrayList<java.lang.Integer> gridSpacingX

gridSpacingY

private java.util.ArrayList<java.lang.Integer> gridSpacingY

gridSpacingZ

private java.util.ArrayList<java.lang.Integer> gridSpacingZ

interval_x
```
float interval_x
```

interval_y
```
float interval_y
```

interval_z
```
float interval_z
```

gridPoints
```
int gridPoints
```

grid
```
int[][] grid
```

xPts
```
int xPts
```

yPts
```
int yPts
```

zPts
```
int zPts
```

reverseIdxGrid
```
int[][] reverseIdxGrid
```

gridVisited
```
byte[][][] gridVisited
```

saveIntermResults
```
boolean saveIntermResults
```

imgSubTarPairs
```
VabraSubjectTargetPairs imgSubTarPairs
```

outputDir
```
java.io.File outputDir
```

gradients
```
double[][] gradients
```

gradMag
```
float[] gradMag
```

index
```
int[] index
```

Constructor Detail

VabraSolver

public VabraSolver(VabraSubjectTargetPairs imgSubTarPairs,
                   java.io.File configFile,
                   java.io.File outputDir,
                   boolean saveIntermResults)

Method Detail

dispose
```
public void dispose()
```

readConfigFile

void readConfigFile(java.io.File f)

registerImages
```
public void registerImages()
```

registerAtCurrentLevel

void registerAtCurrentLevel(int[] boundingBox)

identifyRegions
```
void identifyRegions()
```

optimizeAtGridPoints
```
void optimizeAtGridPoints()
```

generateGrid

void generateGrid(int[] boundingBox,
                  int xPoints,
                  int yPoints,
                  int zPoints)

generateGrid
```
void generateGrid(int[] box)
```

generateFinePoints

void generateFinePoints(int[] point,
                        int[][] newPoints)

beenVisited
```
boolean beenVisited(int gridIdx)
```

markVisited
```
void markVisited(int gridIdx)
```

getDeformedSubject

public ModelImage getDeformedSubject()

getDeformationField

public ModelImage getDeformationField()

Class VabraSolver

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

downSampleFactor

resolutionSwitchPoints

currentLevelIdx

currentResolutionIdx

gridSpacingX

gridSpacingY

gridSpacingZ

interval_x

interval_y

interval_z

gridPoints

grid

xPts

yPts

zPts

reverseIdxGrid

gridVisited

saveIntermResults

imgSubTarPairs

outputDir

gradients

gradMag

index

Constructor Detail

VabraSolver

Method Detail

dispose

readConfigFile

registerImages

registerAtCurrentLevel

identifyRegions

optimizeAtGridPoints

generateGrid

generateGrid

generateFinePoints

beenVisited

markVisited

getDeformedSubject

getDeformationField