java.lang.Object
- java.lang.Thread
- - gov.nih.mipav.model.algorithms.AlgorithmBase
  - - gov.nih.mipav.model.algorithms.filters.MultiResolutionBilateralFilter

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener
```
public class MultiResolutionBilateralFilter
extends AlgorithmBase
```
This is a port of multi_bilateral.py by Yiqian Wang. References: 1.) Feature preserving image denoising with multiresolution filters by Yiqian Wang and You-Yi Jau. 2.) D. L. Donoho and I. M. Johnstone. "Ideal spatial adaptation by wavelet shrinkage." Biometrika 81.3 (1994): 425-455. :DOI:10.1093/biomet/81.3.425

Nested Class Summary
- Nested classes/interfaces inherited from class java.lang.Thread
  java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type	Field	Description
`private int`	`BORDER_REFLECT_101`
`private int`	`d`
`private double`	`epsilon`
`private boolean`	`estimateNoiseStandardDeviation`
`private int`	`filterType`
`private double`	`noiseStandardDeviation`
`private double`	`sigmaColor`
`private double`	`sigmaSpace`
`private int`	`wavelet_levels`
`private PyWavelets.WAVELET_NAME`	`wavelet_name`
`private int`	`wavelet_order`

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor	Description
`MultiResolutionBilateralFilter(ModelImage destImg, ModelImage srcImg, PyWavelets.WAVELET_NAME wavelet_name, int wavelet_order, int wavelet_levels, boolean estimateNoiseStandardDeviation, double noiseStandardDeviation, int filterType, int d, double sigmaColor, double sigmaSpace)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`private double`	`_bayes_thresh(double[][] details, double var)`
`private double`	`_sigma_est_dwt(double[][] detail_coeffs, java.lang.String distribution)`
`void`	`denoiseBW()`
`void`	`denoiseColor()`
`double[][]`	`hard(double[][] data, double value, double substitute)`
`void`	`runAlgorithm()`	Actually runs the algorithm.
`double[][]`	`soft(double[][] data, double value, double substitute)`

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, finalize, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread
activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

BORDER_REFLECT_101
```
private final int BORDER_REFLECT_101
```
See Also:

Constant Field Values

wavelet_name

private PyWavelets.WAVELET_NAME wavelet_name

wavelet_order
```
private int wavelet_order
```

wavelet_levels
```
private int wavelet_levels
```

estimateNoiseStandardDeviation

private boolean estimateNoiseStandardDeviation

noiseStandardDeviation
```
private double noiseStandardDeviation
```

filterType
```
private int filterType
```

d
```
private int d
```

sigmaColor
```
private double sigmaColor
```

sigmaSpace
```
private double sigmaSpace
```

epsilon
```
private double epsilon
```

Constructor Detail

MultiResolutionBilateralFilter

public MultiResolutionBilateralFilter(ModelImage destImg,
                                      ModelImage srcImg,
                                      PyWavelets.WAVELET_NAME wavelet_name,
                                      int wavelet_order,
                                      int wavelet_levels,
                                      boolean estimateNoiseStandardDeviation,
                                      double noiseStandardDeviation,
                                      int filterType,
                                      int d,
                                      double sigmaColor,
                                      double sigmaSpace)

Method Detail

runAlgorithm
```
public void runAlgorithm()
```
Description copied from class: AlgorithmBase

Actually runs the algorithm. Implemented by inheriting algorithms.

Specified by:

runAlgorithm in class AlgorithmBase

denoiseBW
```
public void denoiseBW()
```

hard

public double[][] hard(double[][] data,
                       double value,
                       double substitute)

soft

public double[][] soft(double[][] data,
                       double value,
                       double substitute)

_bayes_thresh

private double _bayes_thresh(double[][] details,
                             double var)

_sigma_est_dwt

private double _sigma_est_dwt(double[][] detail_coeffs,
                              java.lang.String distribution)

denoiseColor
```
public void denoiseColor()
```

Class MultiResolutionBilateralFilter

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Detail

BORDER_REFLECT_101

wavelet_name

wavelet_order

wavelet_levels

estimateNoiseStandardDeviation

noiseStandardDeviation

filterType

d

sigmaColor

sigmaSpace

epsilon

Constructor Detail

MultiResolutionBilateralFilter

Method Detail

runAlgorithm

denoiseBW

hard

soft

_bayes_thresh

_sigma_est_dwt

denoiseColor