java.lang.Object
- gov.nih.mipav.model.algorithms.CeresSolver.LinearOperator
- - gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix
  - - gov.nih.mipav.model.algorithms.CeresSolver.DenseSparseMatrix

Enclosing class:: CeresSolver

class CeresSolver.DenseSparseMatrix
extends CeresSolver.SparseMatrix

Field Summary

Fields
Modifier and Type Field Description

private boolean has_diagonal_appended_

private boolean has_diagonal_reserved_

private Jama.Matrix m_

Constructor Summary

Constructors
Constructor	Description
`DenseSparseMatrix(int num_rows, int num_cols)`
`DenseSparseMatrix(int num_rows, int num_cols, boolean reserve_diagonal)`
`DenseSparseMatrix(CeresSolver.TripletSparseMatrix m)`
`DenseSparseMatrix(Jama.Matrix m)`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`AppendDiagonal(double[] d)`
`void`	`LeftMultiply(double[] x, double[] y)`
`Jama.Matrix`	`matrix()`
`Jama.Matrix`	`mutable_matrix()`
`double[]`	`mutable_values()`
`int`	`num_cols()`
`int`	`num_nonzeros()`
`int`	`num_rows()`
`void`	`RemoveDiagonal()`
`void`	`restoreBackFromColMajorRef(Jama.Matrix new_arrayMat)`
`void`	`RightMultiply(double[] x, double[] y)`
`void`	`ScaleColumns(double[] scale)`
`void`	`setMatrix(int r, int c, double val)`
`void`	`SetZero()`
`void`	`SquaredColumnNorm(double[] x)`
`Jama.Matrix`	`ToDenseMatrix()`
`void`	`ToTextFile(java.io.File file)`
`double[]`	`values()`

Methods inherited from class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix
RightMultiply, ScaleColumns, SquaredColumnNorm

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

m_
```
private Jama.Matrix m_
```

has_diagonal_appended_
```
private boolean has_diagonal_appended_
```

has_diagonal_reserved_
```
private boolean has_diagonal_reserved_
```

Constructor Detail

DenseSparseMatrix

public DenseSparseMatrix(CeresSolver.TripletSparseMatrix m)

DenseSparseMatrix

public DenseSparseMatrix(Jama.Matrix m)

DenseSparseMatrix

public DenseSparseMatrix(int num_rows,
                         int num_cols)

DenseSparseMatrix

public DenseSparseMatrix(int num_rows,
                         int num_cols,
                         boolean reserve_diagonal)

Method Detail
- setMatrix
```
public void setMatrix(int r,
                      int c,
                      double val)
```
- SetZero
```
public void SetZero()
```
  Specified by:
  
  SetZero in class CeresSolver.SparseMatrix
- RightMultiply
```
public void RightMultiply(double[] x,
                          double[] y)
```
  Specified by:
  
  RightMultiply in class CeresSolver.SparseMatrix
- LeftMultiply
```
public void LeftMultiply(double[] x,
                         double[] y)
```
  Specified by:
  
  LeftMultiply in class CeresSolver.SparseMatrix
- SquaredColumnNorm
```
public void SquaredColumnNorm(double[] x)
```
  Specified by:
  
  SquaredColumnNorm in class CeresSolver.SparseMatrix
- ScaleColumns
```
public void ScaleColumns(double[] scale)
```
  Specified by:
  
  ScaleColumns in class CeresSolver.SparseMatrix
- ToDenseMatrix
```
public Jama.Matrix ToDenseMatrix()
```
  Specified by:
  
  ToDenseMatrix in class CeresSolver.SparseMatrix
- ToTextFile
```
public void ToTextFile(java.io.File file)
```
  Specified by:
  
  ToTextFile in class CeresSolver.SparseMatrix
- num_rows
```
public int num_rows()
```
  Specified by:
  
  num_rows in class CeresSolver.SparseMatrix
- num_cols
```
public int num_cols()
```
  Specified by:
  
  num_cols in class CeresSolver.SparseMatrix
- num_nonzeros
```
public int num_nonzeros()
```
  Specified by:
  
  num_nonzeros in class CeresSolver.SparseMatrix
- values
```
public double[] values()
```
  Specified by:
  
  values in class CeresSolver.SparseMatrix
- mutable_values
```
public double[] mutable_values()
```
  Specified by:
  
  mutable_values in class CeresSolver.SparseMatrix
- restoreBackFromColMajorRef
```
public void restoreBackFromColMajorRef(Jama.Matrix new_arrayMat)
```
- matrix
```
public Jama.Matrix matrix()
```
- mutable_matrix
```
public Jama.Matrix mutable_matrix()
```
- AppendDiagonal
```
public void AppendDiagonal(double[] d)
```
- RemoveDiagonal
```
public void RemoveDiagonal()
```

Modifier and Type	Field	Description
`private boolean`	`has_diagonal_appended_`
`private boolean`	`has_diagonal_reserved_`
`private Jama.Matrix`	`m_`

Class CeresSolver.DenseSparseMatrix

Field Summary

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.CeresSolver.SparseMatrix

Methods inherited from class java.lang.Object

Field Detail

m_

has_diagonal_appended_

has_diagonal_reserved_

Constructor Detail

DenseSparseMatrix

DenseSparseMatrix

DenseSparseMatrix

DenseSparseMatrix

Method Detail

setMatrix

SetZero

RightMultiply

LeftMultiply

SquaredColumnNorm

ScaleColumns

ToDenseMatrix

ToTextFile

num_rows

num_cols

num_nonzeros

values

mutable_values

restoreBackFromColMajorRef

matrix

mutable_matrix

AppendDiagonal

RemoveDiagonal