java.lang.Object
- java.lang.Thread
- - gov.nih.mipav.model.algorithms.AlgorithmBase
  - - gov.nih.mipav.model.algorithms.AlgorithmTransformBSpline

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener
```
public class AlgorithmTransformBSpline
extends AlgorithmBase
```
TransformBSpline algorithm This algorithm takes a source image and uses information read in from a .nlt file to perform a nonlinear B-Spline transformation on the image. The dimensions of the transformed image, the degree of the B-Spline(ranging from 1 to 4), the number of control points, and the values of the control points are obtained from the .nlt file. For the .nlt file to be usable, the dimensions of the source image used in the .nlt file must be the same as the dimensions of the source image used in the algorithm.

Nested Class Summary
- Nested classes/interfaces inherited from class java.lang.Thread
  java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type	Field	Description
`private float[][]`	`controlMat`	DOCUMENT ME!
`private float[][][]`	`controlMat25D`	DOCUMENT ME!
`private int[]`	`destExtents`	DOCUMENT ME!
`private boolean`	`have25D`	DOCUMENT ME!
`private int`	`m_iBSplineDegree`	DOCUMENT ME!
`private int`	`m_iBSplineNumControlPoints`	DOCUMENT ME!
`private BSplineLattice2Df`	`m_kBSpline2D`	DOCUMENT ME!
`private BSplineLattice3Df`	`m_kBSpline3D`	DOCUMENT ME!
`private WildMagic.LibFoundation.Curves.BSplineBasisDiscretef`	`m_kBSplineBasisX`	2D and 3D B-Spline basis definitions.
`private WildMagic.LibFoundation.Curves.BSplineBasisDiscretef`	`m_kBSplineBasisY`	DOCUMENT ME!
`private WildMagic.LibFoundation.Curves.BSplineBasisDiscretef`	`m_kBSplineBasisZ`	DOCUMENT ME!
`private ModelImage`	`m_kImageResult`	DOCUMENT ME!
`private ModelImage`	`m_kImageSource`	DOCUMENT ME!
`private ModelSimpleImage`	`m_kSimpleImageSource`	DOCUMENT ME!
`private float[]`	`outResolutions`	DOCUMENT ME!

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor	Description
`AlgorithmTransformBSpline(ModelImage kImageSource, float[] afResolutions, int[] destExtents, int iBSplineDegree, int iBSplineNumControlPoints, float[][] controlMat)`	AlgorithmTransformBSpline - Constructor.
`AlgorithmTransformBSpline(ModelImage kImageSource, float[] afResolutions, int iBSplineDegree, int iBSplineNumControlPoints, float[][][] controlMat25D)`	AlgorithmTransformBSpline - Constructor.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`disposeLocal()`	Prepares this class for destruction.
`void`	`finalize()`	DOCUMENT ME!
`ModelImage`	`getTransformedImage()`	DOCUMENT ME!
`void`	`runAlgorithm()`	starts the program.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread
activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - controlMat
```
private float[][] controlMat
```
    DOCUMENT ME!
  - controlMat25D
```
private float[][][] controlMat25D
```
    DOCUMENT ME!
  - destExtents
```
private int[] destExtents
```
    DOCUMENT ME!
  - have25D
```
private boolean have25D
```
    DOCUMENT ME!
  - m_iBSplineDegree
```
private int m_iBSplineDegree
```
    DOCUMENT ME!
  - m_iBSplineNumControlPoints
```
private int m_iBSplineNumControlPoints
```
    DOCUMENT ME!
  - m_kBSpline2D
```
private BSplineLattice2Df m_kBSpline2D
```
    DOCUMENT ME!
  - m_kBSpline3D
```
private BSplineLattice3Df m_kBSpline3D
```
    DOCUMENT ME!
  - m_kBSplineBasisX
```
private WildMagic.LibFoundation.Curves.BSplineBasisDiscretef m_kBSplineBasisX
```
    2D and 3D B-Spline basis definitions.
  - m_kBSplineBasisY
```
private WildMagic.LibFoundation.Curves.BSplineBasisDiscretef m_kBSplineBasisY
```
    DOCUMENT ME!
  - m_kBSplineBasisZ
```
private WildMagic.LibFoundation.Curves.BSplineBasisDiscretef m_kBSplineBasisZ
```
    DOCUMENT ME!
  - m_kImageResult
```
private ModelImage m_kImageResult
```
    DOCUMENT ME!
  - m_kImageSource
```
private ModelImage m_kImageSource
```
    DOCUMENT ME!
  - m_kSimpleImageSource
```
private ModelSimpleImage m_kSimpleImageSource
```
    DOCUMENT ME!
  - outResolutions
```
private float[] outResolutions
```
    DOCUMENT ME!
- Constructor Detail
  - AlgorithmTransformBSpline
```
public AlgorithmTransformBSpline(ModelImage kImageSource,
                                 float[] afResolutions,
                                 int iBSplineDegree,
                                 int iBSplineNumControlPoints,
                                 float[][][] controlMat25D)
```
    AlgorithmTransformBSpline - Constructor.
    
    Parameters:
    
    kImageSource - image that the B-Spline transformation is applied to
    
    afResolutions - sample resolutions for output image
    
    iBSplineDegree - degree of the B-Spline (same in all dimensions)
    
    iBSplineNumControlPoints - number of control points (same in all dimensions)
    
    controlMat25D - matrix containing the control point values The first index is the slice number The second index is used to select the point with controlY varying the fastest and controlX varying the slowest The second index is used to select the x or y value
  - AlgorithmTransformBSpline
```
public AlgorithmTransformBSpline(ModelImage kImageSource,
                                 float[] afResolutions,
                                 int[] destExtents,
                                 int iBSplineDegree,
                                 int iBSplineNumControlPoints,
                                 float[][] controlMat)
```
    AlgorithmTransformBSpline - Constructor.
    
    Parameters:
    
    kImageSource - image that the B-Spline transformation is applied to
    
    afResolutions - sample resolutions for output image
    
    destExtents - dimensions of the transformed image
    
    iBSplineDegree - degree of the B-Spline (same in all dimensions)
    
    iBSplineNumControlPoints - number of control points (same in all dimensions)
    
    controlMat - matrix containing the control point values The first index is used to select the point with controlZ varying the fastest and controlX varying the slowest The second index is used to select the x, y, or z value
- Method Detail
  - disposeLocal
```
public void disposeLocal()
```
    Prepares this class for destruction.
  - finalize
```
public void finalize()
```
    DOCUMENT ME!
    
    Overrides:
    
    finalize in class AlgorithmBase
  - getTransformedImage
```
public ModelImage getTransformedImage()
```
    DOCUMENT ME!
    
    Returns:
    
    DOCUMENT ME!
  - runAlgorithm
```
public void runAlgorithm()
```
    starts the program.
    
    Specified by:
    
    runAlgorithm in class AlgorithmBase

Class AlgorithmTransformBSpline

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Detail

controlMat

controlMat25D

destExtents

have25D

m_iBSplineDegree

m_iBSplineNumControlPoints

m_kBSpline2D

m_kBSpline3D

m_kBSplineBasisX

m_kBSplineBasisY

m_kBSplineBasisZ

m_kImageResult

m_kImageSource

m_kSimpleImageSource

outResolutions

Constructor Detail

AlgorithmTransformBSpline

AlgorithmTransformBSpline

Method Detail

disposeLocal

finalize

getTransformedImage

runAlgorithm