java.lang.Object
- java.lang.Thread
- - gov.nih.mipav.model.algorithms.AlgorithmBase
  - - gov.nih.mipav.model.algorithms.AlgorithmQuantify

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener
```
public class AlgorithmQuantify
extends AlgorithmBase
```
Quantify image data based on a mask image. At present calculates the number of voxels, volume, total intensity , mean intensity, and standard deviation for an object defined in a mask image.

Version:

0.1 Feb 11, 1998

Author:

Matthew J. McAuliffe, Ph.D.

Nested Class Summary
- Nested classes/interfaces inherited from class java.lang.Thread
  java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type Field Description

private ModelImage maskImage
The mask image.
- Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
  destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped
- Fields inherited from class java.lang.Thread
  MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor Description

AlgorithmQuantify(ModelImage srcImg, ModelImage maskImg)
Creates a new AlgorithmQuantify object.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`finalize()`	Prepares this class for destruction.
`void`	`runAlgorithm()`	Starts the program
`void`	`showRegionInfo(int[] count)`	Display statistics about the grown region.
`void`	`showRegionInfo(int[] count, double[][] total, double[][] mean, double[][] stdDev, double[][] median)`	Display statistics about the grown region.

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class java.lang.Thread
activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield

Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - maskImage
```
private ModelImage maskImage
```
    The mask image. The range of the image [0, positive integer value] where zero is the background and a positive number indicates that is part of an object that has the same positive integer number.
- Constructor Detail
  - AlgorithmQuantify
```
public AlgorithmQuantify(ModelImage srcImg,
                         ModelImage maskImg)
```
    Creates a new AlgorithmQuantify object.
    
    Parameters:
    
    srcImg - image model where result image is to stored
    
    maskImg - source image model
- Method Detail
  - finalize
```
public void finalize()
```
    Prepares this class for destruction.
    
    Overrides:
    
    finalize in class AlgorithmBase
  - runAlgorithm
```
public void runAlgorithm()
```
    Starts the program
    
    Specified by:
    
    runAlgorithm in class AlgorithmBase
  - showRegionInfo
```
public void showRegionInfo(int[] count,
                           double[][] total,
                           double[][] mean,
                           double[][] stdDev,
                           double[][] median)
```
    Display statistics about the grown region.
    
    Parameters:
    
    count - Number of pixels (voxels)
    
    total - Sum of pixel intensities
    
    mean - Average pixel intensity
    
    stdDev - Standard deviation of pixel intensities
    
    median - Median of pixel intensities
  - showRegionInfo
```
public void showRegionInfo(int[] count)
```
    Display statistics about the grown region.
    
    Parameters:
    
    count - Number of pixels (voxels)

Class AlgorithmQuantify

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Detail

maskImage

Constructor Detail

AlgorithmQuantify

Method Detail

finalize

runAlgorithm

showRegionInfo

showRegionInfo