java.lang.Object
- java.lang.Thread
- - gov.nih.mipav.model.algorithms.AlgorithmBase
  - - gov.nih.mipav.model.algorithms.AlgorithmMRIShadingCorrection

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener
```
public class AlgorithmMRIShadingCorrection
extends AlgorithmBase
```
DOCUMENT ME!

Nested Class Summary
- Nested classes/interfaces inherited from class java.lang.Thread
  java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type	Field	Description
`private int`	`iters`	Number of iterations.
`private float`	`norm`	Normalization constant used to normalize the point force.
`private float`	`scaleX`	x and y standard deviations of Gaussians used to convolve normalized forces.
`private float`	`scaleY`	DOCUMENT ME!
`private float`	`thresholdLevel`	DOCUMENT ME!
`private boolean`	`thresholdSelected`	If true, don't use periphery pixels below threshold or pixels below threshold connected to periphery pixels below threshold thru a 4 neighbor chain of below threshold pixels.

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped

Fields inherited from class java.lang.Thread
MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor	Description
`AlgorithmMRIShadingCorrection(ModelImage srcImage, float norm, float scaleX, float scaleY, int iters, boolean thresholdSelected, float thresholdLevel)`	Creates a new AlgorithmMRIShadingCorrection object.
`AlgorithmMRIShadingCorrection(ModelImage resultImage, ModelImage srcImage, float norm, float scaleX, float scaleY, int iters, boolean thresholdSelected, float thresholdLevel)`	Creates a new AlgorithmMRIShadingCorrection object.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method Description

void finalize()
Prepares this class for destruction.

void runAlgorithm()
DOCUMENT ME!
- Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
  actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened
- Methods inherited from class java.lang.Thread
  activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield
- Methods inherited from class java.lang.Object
  equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - iters
```
private int iters
```
    Number of iterations.
  - norm
```
private float norm
```
    Normalization constant used to normalize the point force.
  - scaleX
```
private float scaleX
```
    x and y standard deviations of Gaussians used to convolve normalized forces.
  - scaleY
```
private float scaleY
```
    DOCUMENT ME!
  - thresholdLevel
```
private float thresholdLevel
```
    DOCUMENT ME!
  - thresholdSelected
```
private boolean thresholdSelected
```
    If true, don't use periphery pixels below threshold or pixels below threshold connected to periphery pixels below threshold thru a 4 neighbor chain of below threshold pixels.
- Constructor Detail
  - AlgorithmMRIShadingCorrection
```
public AlgorithmMRIShadingCorrection(ModelImage srcImage,
                                     float norm,
                                     float scaleX,
                                     float scaleY,
                                     int iters,
                                     boolean thresholdSelected,
                                     float thresholdLevel)
```
    Creates a new AlgorithmMRIShadingCorrection object.
    
    Parameters:
    
    srcImage - original image
    
    norm - DOCUMENT ME!
    
    scaleX - DOCUMENT ME!
    
    scaleY - DOCUMENT ME!
    
    iters - DOCUMENT ME!
    
    thresholdSelected - DOCUMENT ME!
    
    thresholdLevel - DOCUMENT ME!
  - AlgorithmMRIShadingCorrection
```
public AlgorithmMRIShadingCorrection(ModelImage resultImage,
                                     ModelImage srcImage,
                                     float norm,
                                     float scaleX,
                                     float scaleY,
                                     int iters,
                                     boolean thresholdSelected,
                                     float thresholdLevel)
```
    Creates a new AlgorithmMRIShadingCorrection object.
    
    Parameters:
    
    resultImage - shading corrected image
    
    srcImage - original image
    
    norm - DOCUMENT ME!
    
    scaleX - DOCUMENT ME!
    
    scaleY - DOCUMENT ME!
    
    iters - DOCUMENT ME!
    
    thresholdSelected - DOCUMENT ME!
    
    thresholdLevel - DOCUMENT ME!
- Method Detail
  - finalize
```
public void finalize()
```
    Prepares this class for destruction.
    
    Overrides:
    
    finalize in class AlgorithmBase
  - runAlgorithm
```
public void runAlgorithm()
```
    DOCUMENT ME!
    
    Specified by:
    
    runAlgorithm in class AlgorithmBase

Modifier and Type	Method	Description
`void`	`finalize()`	Prepares this class for destruction.
`void`	`runAlgorithm()`	DOCUMENT ME!

Class AlgorithmMRIShadingCorrection

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Detail

iters

norm

scaleX

scaleY

thresholdLevel

thresholdSelected

Constructor Detail

AlgorithmMRIShadingCorrection

AlgorithmMRIShadingCorrection

Method Detail

finalize

runAlgorithm