java.lang.Object
- java.lang.Thread
- - gov.nih.mipav.model.algorithms.AlgorithmBase
  - - gov.nih.mipav.model.algorithms.AlgorithmLLE

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.WindowListener, java.lang.Runnable, java.util.EventListener
```
public class AlgorithmLLE
extends AlgorithmBase
```

Nested Class Summary

Nested Classes
Modifier and Type Class Description

private class AlgorithmLLE.distanceIndexComparator

private class AlgorithmLLE.distanceIndexItem
- Nested classes/interfaces inherited from class java.lang.Thread
  java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields
Modifier and Type Field Description

private int d

private int numberOfNeighbors
This is a port of the file lle.m created by Professor Lawrence K.

private double tol
- Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
  destFlag, destImage, image25D, mask, maxProgressValue, minProgressValue, multiThreadingEnabled, nthreads, progress, progressModulus, progressStep, runningInSeparateThread, separable, srcImage, threadStopped
- Fields inherited from class java.lang.Thread
  MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors
Constructor	Description
`AlgorithmLLE(ModelImage destImg, ModelImage srcImg, int d, int numberOfNeighbors, double tol)`	Creates a new AlgorithmLLE object.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method Description

void finalize()
Prepares this class for destruction.

void runAlgorithm()
Starts the algorithm.
- Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase
  actionPerformed, addListener, addProgressChangeListener, calculateImageSize, calculatePrincipleAxis, computeElapsedTime, computeElapsedTime, convertIntoFloat, delinkProgressToAlgorithm, delinkProgressToAlgorithmMulti, displayError, errorCleanUp, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, fireProgressStateChanged, generateProgressValues, getDestImage, getElapsedTime, getMask, getMaxProgressValue, getMinProgressValue, getNumberOfThreads, getProgress, getProgressChangeListener, getProgressChangeListeners, getProgressModulus, getProgressStep, getProgressValues, getSrcImage, isCompleted, isImage25D, isMultiThreadingEnabled, isRunningInSeparateThread, isThreadStopped, linkProgressToAlgorithm, linkProgressToAlgorithm, makeProgress, notifyListeners, removeListener, removeProgressChangeListener, run, setCompleted, setImage25D, setMask, setMaxProgressValue, setMinProgressValue, setMultiThreadingEnabled, setNumberOfThreads, setProgress, setProgressModulus, setProgressStep, setProgressValues, setProgressValues, setRunningInSeparateThread, setSrcImage, setStartTime, setThreadStopped, startMethod, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened
- Methods inherited from class java.lang.Thread
  activeCount, checkAccess, clone, countStackFrames, currentThread, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupt, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, onSpinWait, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, start, stop, suspend, toString, yield
- Methods inherited from class java.lang.Object
  equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - numberOfNeighbors
```
private int numberOfNeighbors
```
    This is a port of the file lle.m created by Professor Lawrence K. Saul References: 1.) Nonlinear Dimensionality Reduction by Locally Linear Embedding by Sam T. Roweis and Lawrence K Saul, Science, Vol. 290, December 22, 2000, pp. 2323 - 2326. 2.) Think Globally, Fit Locally: Unsupervised Learning of Low Dimensional Manifolds by Lawrence K. Saul and Sam T. Roweis, Journal of Machine Learning Research, Vol. 4, 2003, pp. 119 - 155. 3.) Unsupervised Learning of Image Manifolds by Semidefinite Programming by Kilian Q. Weinberger and Lawrence K. Saul.
  - tol
```
private double tol
```
  - d
```
private int d
```
- Constructor Detail
  - AlgorithmLLE
```
public AlgorithmLLE(ModelImage destImg,
                    ModelImage srcImg,
                    int d,
                    int numberOfNeighbors,
                    double tol)
```
    Creates a new AlgorithmLLE object.
    
    Parameters:
    
    destImg - list of image models where result image is to stored
    
    srcImg - source image model
    
    d - Number of embedded dimensions
    
    numberOfNeighbors - Number of neighbors
    
    tol - regularizer
- Method Detail
  - finalize
```
public void finalize()
```
    Prepares this class for destruction.
    
    Overrides:
    
    finalize in class AlgorithmBase
  - runAlgorithm
```
public void runAlgorithm()
```
    Starts the algorithm.
    
    Specified by:
    
    runAlgorithm in class AlgorithmBase

Modifier and Type	Class	Description
`private class`	`AlgorithmLLE.distanceIndexComparator`
`private class`	`AlgorithmLLE.distanceIndexItem`

Modifier and Type	Field	Description
`private int`	`d`
`private int`	`numberOfNeighbors`	This is a port of the file lle.m created by Professor Lawrence K.
`private double`	`tol`

Modifier and Type	Method	Description
`void`	`finalize()`	Prepares this class for destruction.
`void`	`runAlgorithm()`	Starts the algorithm.

Class AlgorithmLLE

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

Field Summary

Fields inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Fields inherited from class java.lang.Thread

Constructor Summary

Method Summary

Methods inherited from class gov.nih.mipav.model.algorithms.AlgorithmBase

Methods inherited from class java.lang.Thread

Methods inherited from class java.lang.Object

Field Detail

numberOfNeighbors

tol

d

Constructor Detail

AlgorithmLLE

Method Detail

finalize

runAlgorithm